The aroma of freshly baked muffins is one of life’s simplest pleasures, isn’t it? These Keto Lemon Cream Cheese Muffins are the perfect way to indulge that craving without straying from your keto goals. With a tender, fluffy crumb and a delightful tang from fresh lemon, they’re not just for breakfast—they make a stunning snack or a sweet treat after dinner too! Whether you’re a seasoned home chef or just starting your baking journey, this easy recipe provides a foolproof method for creating gluten-free delights. Plus, you’ll love that they can be whipped up in no time, making them a go-to choice for busy days. Curious to find out how to bring this tasty guilt-free treat to your table? Let’s dive into the recipe!

Why Are These Muffins Exceptional?
Delightfully Satisfying: Each bite of these Keto Lemon Cream Cheese Muffins is packed with zesty flavor and creamy texture, making them an epic treat.
Quick and Easy: With simple ingredients and straightforward steps, this recipe is perfect for anyone, whether you’re a newbie baker or an experienced chef looking to save time.
Versatile Options: Feeling creative? Try adding blueberries or even a hint of poppy seeds for a classic twist!
Guilt-Free Indulgence: These muffins fit perfectly within your keto diet, with only 4g of carbs per muffin—enjoy without the worry!
Perfectly Moist: Thanks to the cream cheese and heavy cream, every muffin comes out soft and fluffy each time. For those who adore sweet treats, you’re going to love serving these warm with a cup of tea.
Keto Lemon Cream Cheese Muffin Ingredients
• Create your mouthwatering Keto Lemon Cream Cheese Muffins with these simple ingredients:
For the Muffin Base
- Almond Flour – Provides structure and serves as a gluten-free alternative; can be substituted with sunflower seed flour for nut-free muffins.
- Coconut Flour – Absorbs moisture and adds fiber; if omitted, remember to increase the almond flour to maintain texture.
- Baking Powder – Ensures a fluffy rise; always check that it’s fresh for best results.
- Baking Soda – Contributes to browning and enhances texture.
- Salt – Balances the sweetness and enhances overall flavor.
- Powdered Sweetener – Sweetens without carbs; erythritol or stevia work great for keto recipes.
For the Creamy Filling
- Cream Cheese – Brings rich creaminess to the muffins; can switch to mascarpone for a different flavor profile.
- Eggs – Add moisture and structure; you can use flax eggs for a vegan alternative.
- Melted Butter – Infuses flavor and keeps the muffins moist; coconut oil can be used for a dairy-free option.
- Heavy Cream – Enriches the batter with a velvety touch; opt for coconut cream for a dairy-free substitute.
For the Flavor Boost
- Lemon Zest – Provides a vibrant citrus flavor that elevates the muffins.
- Lemon Juice – Adds a refreshing tang; fresh lemons are recommended for the best taste.
- Vanilla Extract – Enhances the overall flavor, giving depth to your muffins.
With these ingredients, your Keto Lemon Cream Cheese Muffins will not only taste delicious but also align perfectly with your healthy eating goals. Time to get baking!
Step‑by‑Step Instructions for Keto Lemon Cream Cheese Muffins
Step 1: Preheat Your Oven
Begin by preheating your oven to 350°F (175°C). While it warms up, prepare your muffin tin; line it with muffin liners or lightly grease each cup with butter or oil to prevent sticking. This will ensure your Keto Lemon Cream Cheese Muffins release easily and maintain their beautiful shape as they bake.
Step 2: Combine Dry Ingredients
In a medium mixing bowl, combine the almond flour, coconut flour, baking powder, baking soda, salt, and powdered sweetener. Use a whisk to mix these ingredients thoroughly until they are well blended and free of lumps. This step is crucial for achieving a light and fluffy texture in your muffins, so take your time to get everything evenly combined.
Step 3: Beat the Cream Cheese
In a large bowl, utilize an electric mixer to beat the cream cheese until it’s smooth and creamy, about 2 minutes. Incorporate the eggs, one at a time, mixing thoroughly after each addition. The goal is to create a well-blended mixture; this will provide the rich texture that makes these Keto Lemon Cream Cheese Muffins so delightful.
Step 4: Add Wet Ingredients
Next, add the melted butter, heavy cream, lemon zest, lemon juice, and vanilla extract to the creamy mixture. Continue mixing until everything is well incorporated and the batter is smooth. The combination of wet ingredients enriches the flavor and keeps your muffins moist, contributing to their luscious, indulgent qualities.
Step 5: Combine Wet and Dry Mixtures
Gently fold the dry ingredients into the wet mixture using a spatula. Be careful not to overmix; you want the batter just combined, as overmixing can lead to dense muffins. This step is where the dough comes to life, bringing together the distinct flavors of the Keto Lemon Cream Cheese Muffins.
Step 6: Fill the Muffin Tin
Spoon the batter into prepared muffin cups, filling each cup about three-quarters full. This allows room for the muffins to rise beautifully without overflowing. If you like, top each muffin with a sprinkle of extra lemon zest or a bit more sweetener for additional flavor and decoration.
Step 7: Bake to Perfection
Place the muffin tin in your preheated oven and bake for 18–22 minutes. Check for doneness starting at the 18-minute mark; the tops should be golden and a toothpick inserted into the center should come out clean. This is where the magic happens—the warm, inviting aroma of your Keto Lemon Cream Cheese Muffins will fill your kitchen!
Step 8: Cool and Enjoy
Once baked, allow the muffins to cool in the tin for about 10 minutes before transferring them to a wire rack. This helps them set properly and ensures they maintain their fluffy texture. Serve warm, and enjoy the zesty, comforting flavors of your freshly baked Keto Lemon Cream Cheese Muffins!

What to Serve with Keto Lemon Cream Cheese Muffins
The bright, zesty flavors of these muffins beckon delightful pairings that enhance your meal experience beautifully.
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Fresh Berries: A medley of strawberries, blueberries, and raspberries adds a refreshing burst, perfectly balancing the muffins’ richness.
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Greek Yogurt: This creamy, tangy addition offers a protein punch and complements the lemon flavor while adding a satisfying texture.
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Herbal Tea: A warm cup of chamomile or mint tea brings a soothing element to your snack, making each bite feel extra cozy.
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Scrambled Eggs: Light, fluffy scrambled eggs provide a savory counterpoint that rounds out your breakfast perfectly, keeping taste and nutrition in harmony.
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Almond Butter: A spread of almond butter on warm muffins offers an earthy richness that harmonizes beautifully with the tangy lemon.
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Chilled Sparkling Water: Crisp and refreshing, sparkling water with a twist of lemon elevates the experience, cleansing the palate wonderfully.
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Lemon Curd: Drizzling a bit of zesty lemon curd adds an extra citrus punch that intensifies the lemony goodness in your muffins.
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Light Salad: A crisp salad with mixed greens, cucumber, and a citrus vinaigrette serves as a vibrant, healthful side, balancing the sweetness with freshness.
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Vanilla Ice Cream: For a delightful dessert touch, a scoop of vanilla ice cream adds creaminess and a contrasting temperature to the warm muffins.
Expert Tips for Keto Lemon Cream Cheese Muffins
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Avoid Overmixing: Gently fold the dry ingredients into the wet mixture; overmixing can result in dense, heavy muffins.
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Check Doneness Early: Start checking the muffins at 18 minutes to prevent overbaking; they should be golden on top and a toothpick should come out clean.
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Cool in Tin: Let the muffins cool in the tin for at least 10 minutes before transferring them to a wire rack; this allows them to set properly, ensuring a fluffy texture.
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Use Fresh Ingredients: Ensure your baking powder is fresh for optimal rise and fluffiness in your Keto Lemon Cream Cheese Muffins.
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Experiment with Flavors: Don’t hesitate to add poppy seeds or berries for a fruity twist! These variations can create exciting new flavor profiles.
How to Store and Freeze Keto Lemon Cream Cheese Muffins
Room Temperature: Store your muffins in an airtight container at room temperature for up to 3 days. This keeps them fresh and soft, ready for snacking!
Fridge: For extended freshness, refrigerate your muffins in an airtight container for up to 1 week. This helps maintain their delightful moisture and flavor.
Freezer: If you want to save them for later, freeze the muffins in a freezer-safe bag or container for up to 3 months. To enjoy, simply thaw overnight in the fridge or pop them in the microwave for a quick treat!
Reheating: Reheat the muffins in the microwave for 15-20 seconds for a warm, fresh-tasting experience. Enjoy the delightful flavor of your Keto Lemon Cream Cheese Muffins again!
Keto Lemon Cream Cheese Muffins Variations
Feel free to get creative with your Keto Lemon Cream Cheese Muffins to make them truly yours and enhance their flavorful goodness!
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Add Poppy Seeds: Mix in 2 tablespoons of poppy seeds for a classic lemon-poppy seed combo. It adds a delightful crunch and a hint of nostalgia to your muffin experience.
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Berry Burst: Incorporate ¾ cup of fresh blueberries or raspberries for a fruity twist. The juicy berries complement the lemon perfectly, creating a pop of flavor with each bite.
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Citrus Swap: Replace lemon juice and zest with lime or orange for a refreshing citrus spin. Each citrus brings its unique zest, giving your muffins a delightful new flavor!
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Chocolate Chip Love: Stir in ½ cup of sugar-free chocolate chips for a sweet contrast to the tangy lemon. This decadent addition makes the muffins feel like a rich dessert!
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Nut-Free Option: Substitute almond flour with sunflower seed flour to keep them nut-free. You still get a delicious muffin without triggering nut allergies.
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Spiced Delight: Add a pinch of cinnamon or nutmeg to the batter for a warm, cozy flavor. Just a little spice enhances the overall taste, bringing warmth to your muffins.
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Cream Cheese Swirl: Create a luscious cream cheese swirl by adding a mixture of cream cheese, sweetener, and vanilla into the batter and swirling it before baking. This adds a beautiful marble effect and extra creaminess.
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Savory Option: For a change, mix in some herbs like fresh chopped rosemary or thyme instead of sweet ingredients. This turns your muffins into a savory snack perfect for pairing with soups or salads.
When you’re ready to savor these delightful muffins, consider enjoying them warm with a side of Honey Cream Cheese or a dollop of Soft Cinnamon Frosting. Each variation allows you to discover new layers of flavor, all while sticking to your keto lifestyle!
Make Ahead Options
These Keto Lemon Cream Cheese Muffins are a fantastic option for meal prep, allowing you to enjoy a delicious treat with minimal effort on busy mornings. You can prepare the batter up to 24 hours in advance—just mix the wet and dry ingredients separately as instructed, then combine them when you’re ready to bake. To maintain their delightful texture, store the prepared batter in an airtight container in the refrigerator. Alternatively, you can bake the muffins and store them in an airtight container for up to 3 days at room temperature or up to 1 week in the fridge. When it’s time to enjoy, simply warm them slightly in the microwave or oven for that freshly baked taste every time!

Keto Lemon Cream Cheese Muffins Recipe FAQs
What type of almond flour works best in this recipe?
Absolutely, using finely ground almond flour is essential for the best texture in your Keto Lemon Cream Cheese Muffins. Ensure it’s 100% pure almond flour, as some brands may contain additional ingredients. If you’re looking for a nut-free alternative, sunflower seed flour works beautifully!
How should I store leftover muffins?
For sure! You can store your muffins in an airtight container at room temperature for about 3 days. If you want them to last longer, keep them in the refrigerator for up to a week. Just make sure they are fully cooled before storing to avoid moisture buildup.
Can I freeze Keto Lemon Cream Cheese Muffins?
Very much! To freeze your muffins, let them cool completely, then place them in a freezer-safe bag or container. They’ll stay fresh for up to 3 months. When you’re ready to enjoy one, simply thaw it in the fridge overnight or microwave it on low for 15-20 seconds to enjoy that fresh-baked taste again!
What should I do if my muffins don’t rise properly?
Oh no! If your muffins don’t rise, it could be due to expired baking powder or baking soda. Always check the freshness of your leavening agents before starting. Additionally, ensure that you’re mixing the wet and dry ingredients just until combined—overmixing can lead to denser muffins instead of a fluffy texture.
Are these muffins safe for those with egg allergies?
Absolutely! If you’re dealing with an egg allergy, you can easily substitute eggs with flax eggs. To make one flax egg, mix 1 tablespoon of ground flaxseed with 2.5 tablespoons of water; let it sit for about 5 minutes to thicken before adding to your batter. This will give you the moisture and binding needed for your Keto Lemon Cream Cheese Muffins while keeping them delicious!
Can I use fresh lemon juice instead of bottled?
Yes! I highly recommend using fresh lemon juice for the best flavor. Fresh lemons provide a vibrant taste and aroma that bottled juice can’t replicate. Just make sure to zest them before juicing to captivate those delightful lemony notes in your muffins!

Keto Lemon Cream Cheese Muffins for a Zesty Guilt-Free Treat
Ingredients
Equipment
Method
- Preheat your oven to 350°F (175°C). Prepare muffin tin with liners or grease with butter/oil.
- Combine almond flour, coconut flour, baking powder, baking soda, salt, and powdered sweetener in a medium bowl.
- Beat cream cheese until smooth, then add eggs one at a time, mixing well.
- Add melted butter, heavy cream, lemon zest, lemon juice, and vanilla extract to the mixture and mix until incorporated.
- Gently fold dry ingredients into wet mixture until just combined.
- Spoon batter into muffin cups, filling them about three-quarters full.
- Bake in the preheated oven for 18–22 minutes, checking at 18 minutes for doneness.
- Allow muffins to cool in the tin for 10 minutes before transferring to a wire rack.

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